BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB016E06SP1|AL427022
(905 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig293 313 5e-85
>3x_Contig293
Length = 1065
Score = 313 bits (155), Expect = 5e-85
Identities = 159/161 (98%)
Strand = Plus / Plus
Query: 1 atctccaagcgatggtcagggcacatagaataggccaaacaaaaccagtcattgtatacc 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 atctccaagcgatggacagggcacatagaataggccaaacaaaaccagtcattgtatacc 964
Query: 61 gtctatactgtgacaacacaattgawaacgttatcatgacaagagctgtcaacaaaagga 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 965 gtctatactgtgacaacacaattgaaaacgttatcatgacaagagctgtcaacaaaagga 1024
Query: 121 aattggaaaagcttgtcattcaaatgggtaagtttaatacg 161
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 1025 aattggaaaagcttgtcattcaaatgggtaagtttaatacg 1065
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.40 0.714 1.33
Gapped
Lambda K H
1.40 0.714 1.33
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4975
Number of Sequences: 1807
Number of extensions: 4975
Number of successful extensions: 106
Number of sequences better than 1.0e-20: 1
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 5 (10.1 bits)
X2: 14 (28.2 bits)
S1: 12 (24.7 bits)
S2: 50 (101.3 bits)